Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916968.1_cds_XP_016466631.1_59465
CDS Infomation

[gene=LOC107789349] [db_xref=GeneID:107789349] [protein=pheophytinase, chloroplastic-like] [protein_id=XP_016466631.1] [location=join(12663..13364,14008..14234,14368..14559,14643..14799,15651..15890)] [gbkey=CDS]
Sequence

ATGGAAGTTCATTCTTGCTATTCTACAACCTATTATTGCATTGTAAATGTTAGCAAATGT
CTAATTTCAAATCAGGCAAAGTTTCCCATAGTAAAAGAAAGAAGGTTGTATTCTGGTTTA
GATGTTTATAGCATAAAGAAAAAGAGGACTCAGAGGCTTACTATCACTGCTCTGAAAGGA
TTTGACAGTGTCGACTCAAGTCTCTTGAGTGAAAGCTATAACTCAGATATTATAGATGGG
AAAGTCGGTACCCAAGATGTGACTGGTAGTGCTAAATCAGTAACAAAGGTTATCGTTCCC
AGTTTACCTGATGAAACTAAAGCCGACTCTGTTGCTGTGGTCGATAGCTGCTTGTGGGAA
TGGAAACCCAAACTGAAAGTTCATTATGAGAAATCTGGTTGTCAAAATGTTAACTCCGCA
CCAATACTTTTTCTTCCTGGTTTTGGTGTTGGCTCCTTTCACTATGAAAAGCAATTAAAA
GATCTTGGTCGTGATCACAGAGTATGGGCATTAGATTTTCTTGGACAAGGGAAGTCATTA
CCATGCGAGGATCCAACTTTGCAGTCCAAAAGATTAGATGAATCTGAACCTGATGGAAAC
AGTGTCGTCTGGGGTTTTGGAGATGAAGCAGAACCTTGGGCAAAAGAACTTGTCTATTCT
GTTGACTTATGGAGGGACCAAGTACGTTATTTTATTGAAGAGGTTATTAAAGAGCCAGTC
TACGTTGTGGGAAATTCGCTTGGTGGATATGTTGCCCTCTACTTAGCAGCATACTACCCT
CAATTGGTGAAAGGTGTAACCTTGCTTAATGCGACCCCATTTTGGGGATTTCTCCCTAAT
CCTGTTAGATCTCCGAGATTATCTAGATTGTTTCCATGGGCTGGGACTTTTCCTCTTCCC
ACCACTATCAGAAAGCTCACAGAACTTGTATGGCAGAAAATTAGTGCTCCCGAGAGCATT
GCGGAGGTGCTTAAACAAGTTTACGCTGATCATACCACAAAAGTGGATAAAGTTTTCTCC
AGTATTCTTGAGATAACAGAACACCCTGCAGCAGCTGCATCCTTAACCTCAATAATGTTT
GCTCCTAGGGGACAACTAAGTTTTAAGGAGGCACTTAATGGGTGTCGAATGAACAATGTG
CCCGTTTGTCTCATGTATGGAAAAGAAGACCCCTGGGTGATGCCTATTTGGGCACTACAA
GTGAAACGCCAATTGCCTGAAGCTCCATATTATCAGATTAGCCCTGCTGGTCACTGCCCC
CATGATGAAGTCCCAGAGATTGTGAATTTTTTGCTGCGTGGATGGATCAAGAACATCGAA
TCGCATAGTTCAGTTGCATTGCCACTGCTTGATAGTCCAGAAAGCATCGAATATGACATT
GTCAGAGACTTGGAATTTGTTCGGCAAGGAATGAAAAAAGCAGTAAGAGTGCAATTTTAC
GGGTCAATGACTTCTCAATGGGAGAGGCTTCGCATGTTTCTAAAATCTCGATTCCAATAT
GGAGTTTACTCTCCATAA

Peptide Sequence

PEP ID

XP_016466631.1
PEP Infomation

PREDICTED: pheophytinase, chloroplastic-like [Nicotiana tabacum]
Sequence

MEVHSCYSTTYYCIVNVSKCLISNQAKFPIVKERRLYSGLDVYSIKKKRTQRLTITALKG
FDSVDSSLLSESYNSDIIDGKVGTQDVTGSAKSVTKVIVPSLPDETKADSVAVVDSCLWE
WKPKLKVHYEKSGCQNVNSAPILFLPGFGVGSFHYEKQLKDLGRDHRVWALDFLGQGKSL
PCEDPTLQSKRLDESEPDGNSVVWGFGDEAEPWAKELVYSVDLWRDQVRYFIEEVIKEPV
YVVGNSLGGYVALYLAAYYPQLVKGVTLLNATPFWGFLPNPVRSPRLSRLFPWAGTFPLP
TTIRKLTELVWQKISAPESIAEVLKQVYADHTTKVDKVFSSILEITEHPAAAASLTSIMF
APRGQLSFKEALNGCRMNNVPVCLMYGKEDPWVMPIWALQVKRQLPEAPYYQISPAGHCP
HDEVPEIVNFLLRGWIKNIESHSSVALPLLDSPESIEYDIVRDLEFVRQGMKKAVRVQFY
GSMTSQWERLRMFLKSRFQYGVYSP

Transcript Sequence

Gene sequence data has not been registered.